Full-length genome characterization and phylogenetic analysis of SARS-CoV-2 virus strains from Yogyakarta and Central Java, Indonesia

Gunadi, Gunandi and Wibawa, Hendra and Marcellus, Marcellus and Hakim, Mohamad Saifudin and Daniwijaya, Edwin Widyanto and Rizki, Ludhang Pradipta and Supriyati, Endah and Nugrahaningsih, Dwi Aris Agung and Afiahayati, Afiahayati and Siswanto, Siswanto and Iskandar, Kristy and Anggorowati, Nungki and Kalim, Alvin Santoso and Puspitarani, Dyah Ayu and Athollah, Kemala and Arguni, Eggi and Nuryastuti, Titik and Wibawa, Tri (2020) Full-length genome characterization and phylogenetic analysis of SARS-CoV-2 virus strains from Yogyakarta and Central Java, Indonesia. PEERJ, 8. ISSN 2167-8359

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Abstract

Recently, SARS-CoV-2 virus with the D614G mutation has become a public concern due to rapid dissemination of this variant across many countries. Our study aims were (1) to report full-length genome sequences of SARS-CoV-2 collected from four COVID-19 patients in the Special Region of Yogyakarta and Central Java provinces, Indonesia; (2) to compare the clade distribution of full-length genome sequences from Indonesia (n = 60) from March to September 2020 and (3) to perform phylogenetic analysis of SARS-CoV-2 complete genomes from different countries, including Indonesia.

Item Type:	Article
Uncontrolled Keywords:	COVID-19; D614G mutation; Indonesia; Phylogenetic analysis; SARS-CoV-2; Whole genome sequencing.
Subjects:	R Medicine > RP Public Health and Nutrition
Divisions:	Faculty of Medicine, Public Health and Nursing > Public Health and Nutrition
Depositing User:	Sri JUNANDI
Date Deposited:	25 Sep 2025 01:25
Last Modified:	25 Sep 2025 01:25
URI:	https://ir.lib.ugm.ac.id/id/eprint/17954

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